Kontakt
+49 711 685 60454
+49 711 685 67735
E-Mail
Pfaffenwaldring 9
70569 Stuttgart
Deutschland
Raum: 3.238
- Computational systems biology
- Modeling biochemical reaction networks
- Bioinformatics
- Machine learning
- Spectral graph theory & Complex networks
Systems biology
Journal(s)
[1] Paul, D. and Radde, N., (2018). The role of stochastic sequestration dynamics for intrinsic noise filtering in signaling network motifs. Journal of Theoretical Biology ,455,86-96
Conference proceeding(s)
[1] Paul, D. and Radde, N., (2016). Robustness and filtering properties of ubiquitous signaling network motifs. IFAC-PapersOnLine, 49(26), pp.120-127.
Book chapter(s) [Peer reviewed]
[1] Paul, D., Dehkordi, L.K.F., von Scheven, M., Bischoff, M. and Radde, N., (2016). Structural Design with Biological Methods: Optimality, Multi-functionality and Robustness. In Biomimetic Research for Architecture and Building Construction (pp. 341-360). Springer, Cham.
Spectral graph theory & complex networks
Journal(s)
[2] Paul, D. and Stevanovic, D., (2018). Eigenvector-based identification of bipartite subgraphs. arXiv preprint arXiv:1806.01711. [Under review ]
[1] Kirkland, S. and Paul, D., (2011). Bipartite subgraphs and the signless Laplacian matrix. Applicable Analysis and Discrete Mathematics, pp.1-13.
Bioinformatics
Conference proceeding(s)
[1] Chen, B.Y. and Paul, D., (2012), October. A volumetric method for representing and comparing regions of electrostatic focusing in molecular structure. In Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine (pp. 242-249). ACM.
Education
| 11/2014-present | Degree: Dr.-Ing. Discipline: Systems Biology Univerisity: University of Stuttgart, Germany |
| 2012-2014 | Degree(s): Master of Science (Tech.) & MS Discipline: Computational & Systems Biology Univerisity: Aalto University, Finland & KTH, Sweden |
| 2009-2011 | Degree: Master of Engineering Discipline: Computer science & Engineerning Univerisity: Jadavpur University, Calcutta, India |
| 2005-2009 | Degree: Bachelor of Technology Discipline: Computer science & Engineerning Univerisity: West Bengal University of Technology, Calcutta, India |
Research & work experiences
| 07/2017-10/2017 | Role: Visiting graduate student Institution/University: Department of Systems Biology, Harvard Medical School, USA Research area: Gene regulation, rule-based modeling |
| 06/2013-08/2013 | Role: Summer research student Institution/University: Department of Computer Science, Aalto University, Finland Research area: Machine learning, kernel methods, protein-protein interaction networks |
| 09/2011-05/2012 | Role: Graduate research assistant Institution/University: Department of Computer Science, Lehigh University, PA, USA Research area: Structural bioinformatics |
| 02/2011-05/2011 | Role: Visting graduate student Institution/University: Department of Mathematics, University of Primorska, Slovenia Research area: Spectral graph theory |
Awards
| 2012-2014 | Organization: The European Commission Award: euro 48,000 Purpose: Erasmus mundus joing master degree in computational & systems biology |
| 02/2011-05/2011 | Organization: Ministry of Higher Education Science & Technology, Slovenia Award: Bilateral mobility grant Purpose: Pursue research on spectral graph theory |